Get background regions from filtered bsseq object based on minCpGs and maxGap
Usage
getBackground(bs = bs.filtered, minNumRegion = 5, maxGap = 1000)
Arguments
- bs
bsseq object that has been filtered for coverage and sorted
- minNumRegion
Minimum CpGs required for a region. Must be at least 3 CpGs, default is 5 CpGs
- maxGap
Maximum distance between CpGs to be included in the same region. Default is 1000 bp
Value
Data.frame of background regions with location, number of CpGs, and width
