Slim GO results — slimGO • DMRichR

Slims top significant Gene Ontology terms from enrichR, rGREAT, and GOfuncR using rrvgo.

Usage

slimGO(
  GO = GO,
  tool = c("enrichR", "rGREAT", "GOfuncR"),
  annoDb = annoDb,
  plots = FALSE,
  threshold = 0.7
)

GO: A dataframe or list of dataframes returned from enrichR::enrichr(), rGREAT::getEnrichmentTables(),or GOfuncR::go_enrich().
tool: A character vector of the name of the database (enrichR, rGREAT, or GOfuncR).
annoDb: Character specifying OrgDb annotation package for species of interest.
plots: Logical indicating if scatter and treemap plots should be generated.
threshold: Numeric indicating similarity threshold (0-1) for rrvgo::reduceSimMatrix(). 0.9 is large, 0.7 is medium, 0.5 is small, and 0.4 is tiny. Default is 0.7.

A tibble of top distinct and significant GO terms from an enrichR,

rGREAT or GOfuncR analysis.

slimGO