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Plot a heatmap of normalized individual smoothed methylation value z scores for selected regions (i.e. significant DMRs)

Usage

smoothPheatmap(
  bs.filtered.bsseq = bs.filtered.bsseq,
  sigRegions = sigRegions,
  testCovariate = testCovariate,
  ...
)

Arguments

bs.filtered.bsseq

Smoothed bsseq object

sigRegions

GRanges object of regions to plot a heatmap for

testCovariate

The factor tested for differences between groups

...

Additional arguments passed onto pheatmap

Value

Saves a pdf image of the heatmap in the DMR folder

Details

smoothPheatmap