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Obtain windows of individual smoothed methylation values

Usage

windows(bs.filtered.bsseq = bs.filtered.bsseq, size = 20000, goi = goi)

Arguments

bs.filtered.bsseq

Smoothed bsseq object with a testCovariate in pData

size

The number of bases in the window (default is 2e4, which is 20 Kb)

goi

A BSgenome object of the genome of interest (i.e. "BSgenome.Hsapiens.UCSC.hg38")

Value

A matrix of smoothed individual methylation values

Details

windows