Ben Laufer
Ben Laufer
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Programs
gg4way
4way plots enable a comparison of the logFC values from two contrasts of differential gene expression. The gg4way R/Bioconductor package creates 4way plots using the ggplot2 framework and supports popular Bioconductor objects. The package also provides information about the correlation between contrasts and significant genes of interest.
Oct 24, 2023
DMRichR
DMRichR is an R package and executable for the preprocessing, statistical analysis, and visualization of differentially methylated regions (DMRs) and global methylation levels from CpG count matrices (Bismark cytosine reports).
Feb 25, 2020
CpG_Me
CpG_Me is a whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports).
Feb 24, 2020
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